A Pipeline for Domain-Specialized Small Language Models from Unstructured Data: A Test Case Using Malaysian Clinical Practice Guidelines

Citation

Yusuf, Campanale Haakim and Ong, Lee Yeng (2026) A Pipeline for Domain-Specialized Small Language Models from Unstructured Data: A Test Case Using Malaysian Clinical Practice Guidelines. Applied Sciences, 16 (13). p. 6630. ISSN 2076-3417

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Abstract

The adoption of Large Language Models (LLMs) in highly regulated, domain-specific sectors is constrained by high computational costs, cloud dependency, and strict data privacy regulations. Furthermore, specific-domain knowledge is usually locked in static, unstructured document formats, preventing automated reasoning. To address these challenges, this study proposes a generalizable end-to-end pipeline for developing domain-specialized Small Language Models (SLMs) optimized for resource-constrained environments starting from unstructured data. To validate the proposed pipeline, Malaysian Clinical Practice Guidelines (CPGs) in PDF format were used as a test case. The methodology systematically digitizes these unstructured data into a NoSQL database and employs an isomorphic teacher model to generate a strictly grounded synthetic instruction-tuning dataset. Through Quantized Low-Rank Adaptation (QLoRA) and 4-bit Post-Training Quantization (PTQ), a general-purpose model is transformed into a highly compressed, domain-specialized SLM, named SpecioSLM. Systematic workstation benchmarking across four candidate architectures identified the Microsoft Phi-3-Mini (3.8B) variant as the optimal model. The model achieved a throughput of 91.59 tokens per second (TPS), a Time to First Token (TTFT) of 0.17 s, and a semantic fidelity BERTScore of 90.27. A preliminary ARM64-based simulation is further conducted targeting a specific edge device to validate architectural and memory footprint viability.

Item Type: Article
Uncontrolled Keywords: small language models, unstructured data extraction, knowledge distillation, QLoRA fine-tuning, privacy-preserving AI
Subjects: P Language and Literature > P Philology. Linguistics
Divisions: Faculty of Information Science and Technology (FIST)
Depositing User: Ms Suzilawati Abu Samah
Date Deposited: 31 Jul 2026 05:59
Last Modified: 31 Jul 2026 05:59
URII: http://shdl.mmu.edu.my/id/eprint/16406

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